rs254997886 SNP Detail

Summary

• ID
  rs254997886
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60214193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTAGGC TCTCGGCTTC
  TGAAGAGGAG CAGTGTGGGC TGCTTAGAAC CTCATGGTGC ACAGGCCAGG CCCAAGACCT
  CAGCAGCCAC TGTAGTCAGC GTGGTACTTC ACTGTGCAGC AGAAGCAGGC CAGGTGGGGT
  TCTATTGGCC ATTGCATATG TGGGGAAACT GAGGCCCAGC CAAACAGAAG AAATGATTTG
  C
  CCAAGGACCT ACTATGTTCC TGACAGGGTC AGCATCCCAC CAGCTCCACT AGGCATTTGT
  TCTATTGGCT ATTTCTTATT TTATGTATGT ATGTATGTAT GTATGTATGT ATGTATGTAT
  GTATGTATGT ATGTATGAAT ATATATATTG AGACAGGGTC TCATGTAGCT CAGGGTGGTC
  TCAAATTTAA GATATAGTTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325214	CHEV_10_59841162	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254997886					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60214193 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr432129	regulatory region 432129	1654 bp proximal
Tssr97724	transcription start site region 97724	1808 bp downstream