rs255016889 SNP Detail

Summary

• ID
  rs255016889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116900675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCTGAA GACAGCTACA
  GTATACTCAT ATAAATAATA AATAAATAAA ACCTTTAAAA AAATTAGTTT TCTCGGGCTG
  GCGAGATGGC TTAGCAGTTA AGAGCACTGA TGGCTCTTCC GAAGGTCCTG AGTTCAAATC
  CCAGCAACCA TAGGTTGGCT CACAACCACC TGTAATGAGA TCTGATGCCC TCCTCTGGTG
  Y
  GTCTGAAGAG TCAGCTACAG TGTACTTATG TATAATAATA AATAAATCTT TGGCTCAGAG
  CGAGCAGGAA CTGAGTGGAG TTGACCAGAG CAAGCTGAGG TCCTAAAAAT TCTATTCCCA
  AGAAGGCTCG CAACCATCTG TACAGCTACA GTGTACTCAC ATAAATAATC TTTTAAAAAA
  AGAGAGAAAT GGTTAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323494032	CHEV_10_116501826	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255016889					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116900675 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	956 bp upstream
Cpgi2223	CpG island 2223	732 bp distal
Rr402250	regulatory region 402250	737 bp downstream
Rr439433	regulatory region 439433	466 bp distal
Rr439434	regulatory region 439434	196 bp distal
Rr439435	regulatory region 439435	within coordinates
Rr439436	regulatory region 439436	354 bp proximal
Tssr99381	transcription start site region 99381	1712 bp upstream
Tssr99382	transcription start site region 99382	1404 bp upstream
Tssr99383	transcription start site region 99383	1018 bp upstream
Tssr99384	transcription start site region 99384	968 bp upstream