rs255024760 SNP Detail

Summary

• ID
  rs255024760
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108689970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATCCACG AATCCTTTCT
  GCACTTTTCT CAAGGACTTC CAAAAAGAGT ATACAGAGAT GAATCAATAT TTATTGGATG
  CCCAAATTAT AAGCATCCAA GTACTTTAAT CATGTTTACA AAGATAAAAA TAATTTGAAT
  TTTCAGCCCT GACTTTTTAT GTGAGGTTTT ACCACTTAGG GCTTTGGAAA GGTATTTAGG
  K
  TCTTTGTACT TGTGTTTGTT TCTCCCGCAT TAAAAAAAGT ATACCATCGC ATACTTTACT
  GAGTTGAAGG CTAAAGCATA GATTATCAAG TTCAGGTAAG ACACTCAGTA GTTGGTAACT
  ATTGTTACCA TTCTTCCAGA GGGCCACTAA TTAGGTATAA TGAAAGAACG TGGGAACGGA
  AGTTGAAACC GCCATTCACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362789923	MGP_WTSI_4_108505378	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255024760					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362789923	MGP_WTSI_4_108505378	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108689970 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	within coordinates
Cpgi14564	CpG island 14564	126 bp proximal
Cpgi14565	CpG island 14565	1889 bp proximal
Rr376990	regulatory region 376990	26 bp upstream
Rr597224	regulatory region 597224	within coordinates
Rr597225	regulatory region 597225	771 bp proximal
Rr597226	regulatory region 597226	1338 bp proximal
Tssr38313	transcription start site region 38313	1837 bp upstream
Tssr38314	transcription start site region 38314	1874 bp upstream
Tssr38315	transcription start site region 38315	1936 bp upstream
Tssr42738	transcription start site region 42738	771 bp downstream
Tssr42739	transcription start site region 42739	835 bp downstream
Tssr42740	transcription start site region 42740	1466 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	1905 bp upstream