rs255028991 SNP Detail

Summary

• ID
  rs255028991
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52139869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTCCTC TCCCCATCCG
  AAGTGGGCGT TTAAAGGGGG CAGAGCGCGG CGAGCAGCGA GCGGGGAGCG CGCGGGGCCG
  AGGGGGAAGG GAAGGGGCGG GGGCGGGGCG GGGCGCGGGA GGGGGCGCGG GAGCCGCTCG
  GAGCCCGCAG TGTAGAGCGC GGCGCGGGCG ATCGGGGCGC CCCCACGAGA GCCCCCCGAC
  K
  CTGGCCGGGG GCCGTGCGTG CCTGGGGCGC CGCGCTCTCG CCTCTCGCCC GCGTGGGGGG
  CTTGCGGACC CCACAGCGGG AGCGACCGGG CCCGGCCTGC CTCCCCCGCG CCCGCGGCCG
  CTTCTCCCCC TGGCGGCAGG ATCCTGGGCG GCCGGTGGCT CCGAGAGCGC GCAGTGGAGC
  CCGAGCTGAG CCGAGCCCGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398453328	MGP_WTSI_17_51972166	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255028991					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398453328	MGP_WTSI_17_51972166	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52139869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	within coordinates
Gm6934	predicted gene 6934	within coordinates
Rr370288	regulatory region 370288	364 bp upstream
Rr528751	regulatory region 528751	180 bp distal
Rr528752	regulatory region 528752	within coordinates
Rr528753	regulatory region 528753	120 bp proximal
Rr528754	regulatory region 528754	439 bp proximal
Satb1	special AT-rich sequence binding protein 1	within coordinates
Tssr145166	transcription start site region 145166	64 bp downstream
Tssr145167	transcription start site region 145167	41 bp downstream
Tssr145168	transcription start site region 145168	16 bp downstream
Tssr145169	transcription start site region 145169	166 bp upstream
Tssr145170	transcription start site region 145170	179 bp upstream
Tssr145171	transcription start site region 145171	401 bp upstream
Tssr145172	transcription start site region 145172	1621 bp upstream
Tssr148679	transcription start site region 148679	946 bp upstream
Tssr148680	transcription start site region 148680	208 bp upstream
Tssr148681	transcription start site region 148681	187 bp upstream
Tssr148682	transcription start site region 148682	163 bp upstream
Tssr148683	transcription start site region 148683	144 bp upstream
Tssr148684	transcription start site region 148684	234 bp downstream
Tssr148685	transcription start site region 148685	272 bp downstream
Tssr148686	transcription start site region 148686	364 bp downstream
Tssr148687	transcription start site region 148687	409 bp downstream
Tssr148688	transcription start site region 148688	437 bp downstream