rs255031684 SNP Detail

Summary

• ID
  rs255031684
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22713088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAAAGA AAAAAAAAAA
  AAACCACTGC AGCACTGCAT AGCTGGAAGG GGTGGGGCTG ACATCTCCTT AGTCCTCCCA
  CCCCTCAGCC AAGCCCCACC ACAGGGCTAG TGTTCACACT AGGTGCCATG CATTGGATCA
  GCGGAGCAGG GCGTTTGCTC ACCTCTCCCT TCTGTCCGGC TCCACAGCGG CCCTTCGGAG
  W
  GGTGTATGAG ATGGAAGTTG ACACACTGGA GACCACTTGC CATGCTTTGG ACCCCACCCC
  GCTGGCAAAC TGTTCTGTGA GGCAGCTGAC TGAGCACGTG AGTGCTGCCT TGTGGTTGGT
  TGGTGGGTGG GTGGGTGGGT GGGAGCTGCC CAGCCACCAC AGTTCAGCAA AGTGCAGGTT
  TGGCTTTCTC CATCTCCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628339	MGP_WTSI_16_22894411	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255031684					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628339	MGP_WTSI_16_22894411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22713088 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	within coordinates
Tssr4818	transcription start site region 4818	1514 bp downstream
Tssr4819	transcription start site region 4819	993 bp upstream
Tssr4820	transcription start site region 4820	1609 bp upstream
Tssr137558	transcription start site region 137558	1757 bp downstream
Tssr137559	transcription start site region 137559	1561 bp downstream
Tssr137560	transcription start site region 137560	1518 bp downstream
Tssr137561	transcription start site region 137561	1493 bp downstream
Tssr137562	transcription start site region 137562	1167 bp downstream
Tssr137563	transcription start site region 137563	97 bp downstream
Tssr137564	transcription start site region 137564	67 bp downstream
Tssr137565	transcription start site region 137565	within coordinates
Tssr137566	transcription start site region 137566	74 bp upstream
Tssr137567	transcription start site region 137567	439 bp upstream
Tssr137568	transcription start site region 137568	458 bp upstream
Tssr137569	transcription start site region 137569	489 bp upstream
Tssr137570	transcription start site region 137570	504 bp upstream
Tssr137571	transcription start site region 137571	838 bp upstream
Tssr137572	transcription start site region 137572	861 bp upstream
Tssr137573	transcription start site region 137573	955 bp upstream
Tssr137574	transcription start site region 137574	976 bp upstream
Tssr137575	transcription start site region 137575	982 bp upstream
Tssr137576	transcription start site region 137576	1662 bp upstream
Tssr140504	transcription start site region 140504	12 bp downstream
Tssr140505	transcription start site region 140505	85 bp downstream
Tssr140506	transcription start site region 140506	492 bp downstream
Tssr140507	transcription start site region 140507	875 bp downstream
Tssr140508	transcription start site region 140508	919 bp downstream
Tssr140509	transcription start site region 140509	938 bp downstream
Tssr140510	transcription start site region 140510	953 bp downstream
Tssr140511	transcription start site region 140511	996 bp downstream