rs255039637 SNP Detail

Summary

• ID
  rs255039637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84493458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGGCGCGGC AGCTGGAAGC CGAAGGGCGG GGAGGGCGGC
  GCGGGGGCCG CGGGGGGCTG TGCCGGGGGT GGCGCGGGAC CGGTCAGGCC CTGCTGCTGG
  Y
  TGCGGTAGTA GGCGGCGGCG GCCGCGGCGG CGAAGTTGTG GGTCTGGATG GCGAGCGGCG
  TGATGAGGCT GCTCAGCTCC GGGCCGAAAG CGAAGGCGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399282271	MGP_WTSI_17_84585370	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	C	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255039637					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	C	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399282271	MGP_WTSI_17_84585370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84493458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	within coordinates
Cpgi9566	CpG island 9566	1581 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	1843 bp upstream
Tssr146044	transcription start site region 146044	269 bp downstream
Tssr146045	transcription start site region 146045	1060 bp upstream
Tssr149650	transcription start site region 149650	443 bp upstream
Tssr149651	transcription start site region 149651	389 bp upstream
Tssr149652	transcription start site region 149652	9 bp upstream
Tssr149653	transcription start site region 149653	5 bp downstream
Tssr149654	transcription start site region 149654	145 bp downstream
Tssr149655	transcription start site region 149655	241 bp downstream
Tssr149656	transcription start site region 149656	331 bp downstream
Tssr149657	transcription start site region 149657	547 bp downstream
Tssr149658	transcription start site region 149658	604 bp downstream
Tssr149659	transcription start site region 149659	639 bp downstream
Tssr149660	transcription start site region 149660	670 bp downstream
Tssr149661	transcription start site region 149661	719 bp downstream
Tssr149662	transcription start site region 149662	778 bp downstream
Tssr149663	transcription start site region 149663	842 bp downstream
Tssr149664	transcription start site region 149664	883 bp downstream
Tssr149665	transcription start site region 149665	928 bp downstream
Tssr149666	transcription start site region 149666	997 bp downstream
Tssr149667	transcription start site region 149667	1086 bp downstream
Tssr149668	transcription start site region 149668	1141 bp downstream
Tssr149669	transcription start site region 149669	1174 bp downstream
Tssr149670	transcription start site region 149670	1707 bp downstream
Tssr149671	transcription start site region 149671	1797 bp downstream
Tssr149672	transcription start site region 149672	1909 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates