rs255046231 SNP Detail

Summary

• ID
  rs255046231
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGGAGA AGGGGAAAGG
  AACACTGCCT CTGGATAGAG AGGAGGCAGA TGTGGCACAT AGGCAAATGA CAGTTTATAA
  AGGTAAAGGG GAAGTCCCCT GTTTAGATGA GGGGTTTATT TTTGATTGTA CAGATTAATT
  AGGGCAGCCA AAGGGAGGGG CCCTTAATAG CCTCAGGGGG CAGGAGTCGG CCAAAAGGGG
  K
  ACTAGATCTT GGTGGCTGGC TTTAGGAATG TAATGGAACG GTTTTTAACA AGGAAGATGG
  GCTAGGAGAA GGCAAGGCCT GCCAGAGCCA TGCCTGCCAT GCTCAGCTCT GCTAGAGCCC
  CTCAGAATCG ACCTGACTCT GCTGAGTATT TCAGAGTGGC AATTGTCCCA GAAGACTTAA
  TGCTCTTTCC AAAAGTGACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320111974	CHEV_1_172573670	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255046231					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	631 bp proximal
Olfml2b	olfactomedin-like 2B	993 bp upstream
Rr14047	regulatory region 14047	908 bp distal
Rr28935	regulatory region 28935	292 bp proximal
Tssr280	transcription start site region 280	805 bp downstream
Tssr9927	transcription start site region 9927	688 bp downstream
Tssr9928	transcription start site region 9928	910 bp upstream
Tssr9929	transcription start site region 9929	951 bp upstream
Tssr9930	transcription start site region 9930	984 bp upstream
Tssr9931	transcription start site region 9931	1033 bp upstream
Tssr9932	transcription start site region 9932	1050 bp upstream
Tssr9933	transcription start site region 9933	1246 bp upstream
Tssr14922	transcription start site region 14922	789 bp downstream
Tssr14923	transcription start site region 14923	840 bp downstream