rs255052071 SNP Detail

Summary

• ID
  rs255052071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19489433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTTCTTC TCATTGCCAC
  AGACAGATGT TCTTCTAAGC AGAGAGAAGC TGATGATGGC CAAGTAGATC ACACTCTTGA
  GGAGCAGGAG GAGGTAGGTG TAGTAGGCAG AGGTGCTCGT GAACTGGAAC TGCAGCACAT
  CTAAAAGAGT TCTTTAATTA GCTCCATCTG CCTTTTTGAT GGCATAGTAC ATATTACCAA
  Y
  GAGGGAATAA TAGGTATTAA TTTCTTTTTT AAGGTATTAA TTTCTGATGA CTTACATTGA
  GTAACAGCTA TCCTCATTCA AACCTGACAG TCAGCACTCA CCATTCACAA GAGAACCACA
  GACAGGGAGA TCAAACTTGG AAAGCAGCCT GTCTAAACCC ATCAGTGCCC ATAACAAGTG
  AGTAAGTAGA TGACTTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss387894549	MGP_WTSI_13_19397132	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs255052071					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387894549	MGP_WTSI_13_19397132	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19489433 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	within coordinates
Tssr118532	transcription start site region 118532	90 bp downstream
Tssr121559	transcription start site region 121559	874 bp upstream
Tssr121560	transcription start site region 121560	812 bp upstream
Tssr121561	transcription start site region 121561	270 bp upstream
Tssr121562	transcription start site region 121562	898 bp downstream
Tssr121563	transcription start site region 121563	1039 bp downstream