rs255053030 SNP Detail

Summary

• ID
  rs255053030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142201088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGGGGA GTGTAGCAAG
  GCAAAGGGGG GAAAGCCAAG GACCAAGAGC CCATGGGGTC CCTCAGAGGG GACAGTGAAG
  ATCTTAAGAA GAAGCTGCCT TCCAGAGTGT CAGTGGAACC CTGCGCTCAC TCGCAATGTA
  AGTTTTGGAG TCTTCTGTAT GGAAGTACTG GTTCCATGCA GTGCTCTACC AACTGTGTCT
  Y
  AAGTTGAGTC ACTGTCCCCC AGCCCATGAC CACACTCATG GGGACAGAGA CAGGCCTAGT
  GCTCTAGAAA TCAGCCTGCA CTCAGGTCTG ACAGCTTCTG AGTCTGCCTC TGCATTCAAC
  TCAAGACACA GGAAAATGAG ACCAGTCATC CACGTGCCTT TCCTTCTGAG GCCAGGTACT
  CCGAGGCTGC ATGCTCAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360021468	MGP_WTSI_3_142158291	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255053030					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360021468	MGP_WTSI_3_142158291	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142201088 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	1607 bp upstream
Rr398083	regulatory region 398083	1576 bp downstream
Rr398084	regulatory region 398084	1173 bp upstream
Rr586444	regulatory region 586444	1079 bp distal
Rr586445	regulatory region 586445	1685 bp distal
Rr586446	regulatory region 586446	1083 bp proximal
Rr586447	regulatory region 586447	1584 bp proximal
Tssr32047	transcription start site region 32047	1445 bp upstream
Tssr32048	transcription start site region 32048	1464 bp upstream
Tssr32049	transcription start site region 32049	1488 bp upstream
Tssr32050	transcription start site region 32050	1546 bp upstream
Tssr32051	transcription start site region 32051	1597 bp upstream