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rs255054289 SNP Detail
Summary
  • ID
    rs255054289
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr8:15043221 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCACTGCAGG GCACTCTTGT
    GTTTCTTTCC GCTCGCCTGT AGCCATGGCT GCCCCTCCTC AGCCTCCTGC TCTGCTTCCA
    GTTGGCCAAG CATTGACTGT TCCCAACCTT CCCTACAAAG CCTGGCCCTC CTTGGCACCA
    CCAGATTCAT GGGACTGTTT TCCATTTTCC AGAGGCCCAC CCACCTCACC GATCAAAGGG
    Y
    ATGCCAGAGT CTCTTGAAAG TGTTATGGTT TGAATATAGC ACTGCCCCTT GACAGCCTGT
    GGGTTTAAGG TTAGGGACAG TTGGACCATG AGGGCTCTGG CCTAATCCAA CGGTGGCTTC
    ATACTTCAAT GGTGTTGAGA GGTAGAGGAA ACTAGGAAAT GGGGTGTAGT TAGAGGAGGC
    GTGTTGCTGG AGGAATGCCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373786463 MGP_WTSI_8_14993221 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255054289 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss373786463 MGP_WTSI_8_14993221 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:15043221 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Arhgef10 Rho guanine nucleotide exchange factor 10 within coordinates
Gm35149 predicted gene, 35149 within coordinates
Gm56855 predicted gene, 56855 878 bp downstream
Gm64037 predicted gene, 64037 1418 bp upstream
Rr368499 regulatory region 368499 1146 bp upstream
Rr660150 regulatory region 660150 73 bp distal
Rr660151 regulatory region 660151 358 bp distal
Rr660152 regulatory region 660152 928 bp proximal
Rr660153 regulatory region 660153 1429 bp proximal
Tssr76473 transcription start site region 76473 211 bp downstream
Tssr76474 transcription start site region 76474 1426 bp upstream
Tssr80482 transcription start site region 80482 1264 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory