rs255056829 SNP Detail

Summary

• ID
  rs255056829
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141932681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTGATAG CCAAGCTCAA
  GGCTGAGAGT CAGGCTGGAG CTGAGGGACA GGGATGCTCT CTGCCTGGCA AAACCCAAGG
  CAGGCTTCTA AGAGGAAGCC AGGGTCACGG TCCTGAGAAG CTGAGCTGGC TTCAGCCATG
  GACATAGCAC TTGCTATCAC TCTGCTTCTC CTGTAAACAT TTCTCTCAAC TCCCCTACAC
  R
  ATACCTTCAA ACAGAACACA GGGAGAGTGG TCTGTACCTA CAGCAGTAAA TGTTCTTCAG
  CAACCAGCGA GTAAGTATGC AAGCTTGCCA CCTCCGACCT GAGGGGCCTG GGTAATGTGT
  CACATCTGGC CAGGCATCAC TCTGGGGCAC GATTACCCAA AGCTGAAGGG AAGCTTTCAT
  CTCAGGAGCT GCCGTCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373449939	MGP_WTSI_7_149564849	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255056829					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373449939	MGP_WTSI_7_149564849	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141932681 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Tssr70134	transcription start site region 70134	1868 bp downstream
Tssr70135	transcription start site region 70135	1813 bp downstream
Tssr70136	transcription start site region 70136	1601 bp downstream
Tssr70137	transcription start site region 70137	1839 bp upstream
Tssr70138	transcription start site region 70138	1887 bp upstream
Tssr70139	transcription start site region 70139	1906 bp upstream
Tssr70140	transcription start site region 70140	1936 bp upstream
Tssr70141	transcription start site region 70141	1949 bp upstream
Tssr70142	transcription start site region 70142	1985 bp upstream
Tssr75765	transcription start site region 75765	1884 bp upstream
Tssr75766	transcription start site region 75766	1862 bp upstream
Tssr75767	transcription start site region 75767	1852 bp upstream
Tssr75768	transcription start site region 75768	1830 bp upstream
Tssr75769	transcription start site region 75769	1808 bp upstream
Tssr75770	transcription start site region 75770	1776 bp upstream
Tssr75771	transcription start site region 75771	1550 bp upstream
Tssr75772	transcription start site region 75772	1492 bp upstream
Tssr75773	transcription start site region 75773	1292 bp upstream
Tssr75774	transcription start site region 75774	1846 bp downstream
Tssr75775	transcription start site region 75775	1867 bp downstream
Tssr75776	transcription start site region 75776	1873 bp downstream
Tssr75777	transcription start site region 75777	1906 bp downstream
Tssr75778	transcription start site region 75778	1946 bp downstream
Tssr75779	transcription start site region 75779	1982 bp downstream
Tssr75780	transcription start site region 75780	1992 bp downstream