rs255060527 SNP Detail

Summary

• ID
  rs255060527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99756904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAGCAA AACTGCCTAC
  TTTTTTTTTT GTCCAAAGGG GGTACAGTCG AGACTTGCTT TGGGAGAGTC GGGAGAGGGG
  AAGAAGATGT GTAGCTTTCT AAATGTTTGC AAATTTCTGG CACCAGTCTG TGCCTTGGGT
  CCAGGATGAT GGCCCTTCCC TTCCCCCCTG GAAGAGAGAG GCAGAGTCTG GGGTGGGCAA
  R
  GGGCAGCGGC AGGCCTGACC CAGAGGCATC TGCGGGCCAG ACTAGGTGCA AAGGAAAGGA
  TTCAGATCTC TGCTTCCACG CTACCCATCA GGTCCGGGCC AAGCTTGGGG TTACATGGCC
  GTAGCGTGGG CTGACGAATA AGGGTCTATG CCAGTCTTGG TCATGCCTGG GAAGAGGATG
  TAGGCGACAG GGGGCTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323137445	CHEV_9_99775270	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255060527					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99756904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	8 bp proximal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	867 bp upstream
Rr685461	regulatory region 685461	1670 bp distal
Rr685462	regulatory region 685462	709 bp distal
Rr685463	regulatory region 685463	377 bp proximal
Rr685464	regulatory region 685464	878 bp proximal
Rr685465	regulatory region 685465	1309 bp proximal
Sox14	SRY (sex determining region Y)-box 14	within coordinates
Tssr91083	transcription start site region 91083	1296 bp downstream
Tssr91084	transcription start site region 91084	1347 bp downstream