rs255062006 SNP Detail

Summary

• ID
  rs255062006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93350025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCTCCC AAGAAAGACC
  AGAGCAATGA ATATTGATCA ATATTGTTTT AAAACATGAC AGGGCTACAT TCATTTTTGA
  GCCCGAGTTA TTTAAATCTG TATTGTAATA TGAGTATTAA AGAAGTTAAT AGCATATATT
  TAATGGTCTT GATGGCATTG TTAGTAGGAA TGAAGTGTAA GTTAATAGGG CATTACCACT
  R
  ATGATGCCTG ATCAAGTTAG TTGGACCTGA AAAGACTCCC CGCACCATCT TCCAACTTTC
  AGCAACAGAA ATTTGCCTGT TTCGCAATTA AAATGGCATT GCTGTAAATA TCTCAGTTCT
  TCTTCAAACA TGGAATAAGA CTTAAATCAG GAGCACTGGC TATTTCAAGC AGAAATATCT
  GTTGAAAATC TTCTTAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358876284	MGP_WTSI_3_93246640	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255062006					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358876284	MGP_WTSI_3_93246640	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93350025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	807 bp proximal
Gm37245	predicted gene, 37245	within coordinates
Gm56800	predicted gene, 56800	356 bp downstream
Gm66249	predicted gene, 66249	within coordinates
Tchh	trichohyalin	within coordinates
Tssr960	transcription start site region 960	709 bp upstream
Tssr961	transcription start site region 961	1285 bp upstream
Tssr30344	transcription start site region 30344	1954 bp downstream
Tssr30345	transcription start site region 30345	329 bp downstream
Tssr30346	transcription start site region 30346	304 bp downstream
Tssr30347	transcription start site region 30347	733 bp upstream
Tssr30348	transcription start site region 30348	772 bp upstream
Tssr30349	transcription start site region 30349	778 bp upstream
Tssr30350	transcription start site region 30350	820 bp upstream
Tssr30351	transcription start site region 30351	851 bp upstream
Tssr30352	transcription start site region 30352	900 bp upstream
Tssr30353	transcription start site region 30353	912 bp upstream
Tssr30354	transcription start site region 30354	930 bp upstream
Tssr30355	transcription start site region 30355	949 bp upstream
Tssr30356	transcription start site region 30356	962 bp upstream
Tssr30357	transcription start site region 30357	1060 bp upstream
Tssr30358	transcription start site region 30358	1175 bp upstream
Tssr30359	transcription start site region 30359	1204 bp upstream
Tssr30360	transcription start site region 30360	1234 bp upstream
Tssr30361	transcription start site region 30361	1559 bp upstream
Tssr30362	transcription start site region 30362	1573 bp upstream
Tssr30363	transcription start site region 30363	1716 bp upstream
Tssr30364	transcription start site region 30364	1787 bp upstream
Tssr30365	transcription start site region 30365	1822 bp upstream
Tssr30366	transcription start site region 30366	1874 bp upstream
Tssr30367	transcription start site region 30367	1918 bp upstream
Tssr30368	transcription start site region 30368	1935 bp upstream
Tssr30369	transcription start site region 30369	1948 bp upstream
Tssr30370	transcription start site region 30370	1955 bp upstream
Tssr30371	transcription start site region 30371	1975 bp upstream
Tssr30372	transcription start site region 30372	1988 bp upstream
Tssr34352	transcription start site region 34352	1146 bp downstream
Tssr34353	transcription start site region 34353	1167 bp downstream
Tssr34354	transcription start site region 34354	1177 bp downstream
Tssr34355	transcription start site region 34355	1315 bp downstream
Tssr34356	transcription start site region 34356	1987 bp downstream