rs255062606 SNP Detail

Summary

• ID
  rs255062606
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76171204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCATGAT CTCTTCCTCG
  CCTTGTGTTT TCTGCTTTTA AAACCTATTC TCTCTACTCC CTTCATATCT TACTTGTGAA
  GCCTCCTTTT AACGCTCCCC CTACCCCAGA TGTCTCTGTC TCGTTTGTTT TTGACTCTAG
  TCATGAAAAG AATTACCTGC GGGAAGACTT GTGGTTGCAG AAGTTGTTTT TGTTTGACAT
  W
  AAAAAAAAAA AAAAAAGGCT AAAGTACATC TTCGATTCAC CCTAAACTCT GAAGTGCTAT
  CCCTGCCTTA AAATACTTAC TAAGACAATT TTGTGGATGA AGCTTTCTAC TCTCATATGT
  TTTCATATCC TTAAGAATTT CGGTAGCATT TGGAAGCAGT TATTGATGCA CACCAAAACC
  AAAAATTATC CAAGTGACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss396907194	MGP_WTSI_16_76374561	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs255062606					SNP	A	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396907194	MGP_WTSI_16_76374561	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76171204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8372	CpG island 8372	502 bp distal
Nrip1	nuclear receptor interacting protein 1	489 bp upstream
Rr325475	regulatory region 325475	3 bp distal
Tssr139017	transcription start site region 139017	1209 bp downstream
Tssr139018	transcription start site region 139018	1103 bp downstream
Tssr141820	transcription start site region 141820	1213 bp upstream
Tssr141821	transcription start site region 141821	464 bp upstream
Tssr141822	transcription start site region 141822	445 bp upstream
Tssr141823	transcription start site region 141823	430 bp upstream