rs255066656 SNP Detail

Summary

• ID
  rs255066656
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108142130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTTTGG CCTAGGGCCA
  GGCTGGAGTT TCAGACACAA GCTGTTATCA GTAAACTCAT TCTGAATACA GACCCGGCGG
  CTACTCAGCC TGGGATTCCT GCCTAAAGGA CGGGCAGTTC TCTTCAGAAG AGTCTAGGAG
  AAAAAATTTT CAGGAAGAAA TGCCCTACCT CAAATACCTG TTTGCAATTT CTCAATTCTT
  M
  CGTGACTAAC TCATAGAGCC TAGAAAAGGA AGAGGAACTA AAATCCAGGA GAGCAAGAGC
  AGGCCATCCC TTGGATGTTA ATAAACTGAA GAGTTAATGG CTTCTCAGAT TCTGACTTTA
  AGACTGTACC ATTTTAGAAA GGCTGAGAAT GAGCTGGCCA TGGTTGCTGC CGTCTGTAAT
  CTTTACACTC ATAAAGCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378863606	MGP_WTSI_9_108167262	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255066656					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378863606	MGP_WTSI_9_108167262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108142130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22331	CpG island 22331	491 bp distal
Dag1	dystroglycan 1	954 bp upstream
Gm69433	predicted gene, 69433	within coordinates
Rr401678	regulatory region 401678	721 bp downstream
Rr686759	regulatory region 686759	1206 bp distal
Rr686760	regulatory region 686760	1635 bp distal
Rr686761	regulatory region 686761	873 bp distal
Rr686762	regulatory region 686762	within coordinates
Rr686763	regulatory region 686763	1427 bp proximal
Tssr87070	transcription start site region 87070	845 bp downstream
Tssr91511	transcription start site region 91511	1112 bp upstream
Tssr91512	transcription start site region 91512	966 bp upstream