rs255071562 SNP Detail

Summary

• ID
  rs255071562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45924674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGTTGCA GCAGGGCGGT
  GGGGCCAGGG GAGTCCGCGA TTCCCCGGGG CTCGGGTCAG GGTCAGCAGT GGGGACCGGT
  GCTGGCGGGA GAAGGCAGGG ACCTCAGAGC GGAGGGGTTC CGGAAGGGGG GGCTCCGGGA
  ACTTAGCAGC TGGACATCGG AGAGGTCCCC AGGGCTGTGC GCAGGGTCGG GGGGGGGGGG
  K
  GACTGGAAAG GAGGCGTTGG AACTCTCTGG GGGCCGGCGG ACTGCACGCC AGGAAGACTC
  CGGAACCAGC AATTAGGAAA CCATCAGAAC GAGGGCAGGG GCATATGAAA TGTGGACCAC
  AGGATGGGGG AGACGCGCAA ACTGGCTGCC TCAGGCTTCC CAGGACGGCT GGGGCATGGG
  GCTGAGGGTG TGCGGTGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss377446855	MGP_WTSI_9_45821459	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs255071562					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377446855	MGP_WTSI_9_45821459	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45924674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21700	CpG island 21700	within coordinates
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	686 bp upstream
Rr401349	regulatory region 401349	573 bp downstream
Rr678027	regulatory region 678027	546 bp distal
Rr678028	regulatory region 678028	596 bp distal
Rr678029	regulatory region 678029	1183 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84822	transcription start site region 84822	555 bp downstream
Tssr84823	transcription start site region 84823	516 bp downstream
Tssr89308	transcription start site region 89308	683 bp upstream