rs255072327 SNP Detail

Summary

• ID
  rs255072327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116386909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGGCCA GCCAGGGTGA
  CCCTCAGACC CTCTCTCAGA ATAGAGTACA GGAGAAAATA CGCCAGGAAC AACAAGGCAT
  GGCTTTAACA ATTTAGAATG GGTCATATTC ACTAGCTTTG CAACTTTTCT AAATGCTAGT
  TACAGTCTTT TATGTTTTAT GCATTTAATT ATAGGCACTG GGAGAAAAGC AAGGGAAACA
  R
  TGTTGGCAGG TCTGCCCCAC AGATCCTATC AACCTGGATG CAACAGGATG GCCCAATTAT
  TAAATCCAGA GGCCAGTGGT TAGGTGTGAT TCTCAGCTCT TTCTATTAGC TGCTAACTCT
  ATAATCCTGA CTGCTTCATG TAAATAATAG TATAGACTTT CTATATTAAG TATAGACTTA
  CTATATTATT AAGTAGAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895787	CHEV_3_116296178	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255072327					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116386909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	1216 bp proximal
Rr397965	regulatory region 397965	1503 bp upstream
Rr583746	regulatory region 583746	1190 bp proximal
Rr583747	regulatory region 583747	1487 bp proximal
Rr583748	regulatory region 583748	1568 bp proximal
Rr583749	regulatory region 583749	1761 bp proximal
Rr583750	regulatory region 583750	1929 bp proximal
Sass6	SAS-6 centriolar assembly protein	1722 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1699 bp upstream
Tssr35316	transcription start site region 35316	1556 bp downstream
Tssr35317	transcription start site region 35317	1588 bp downstream