rs255077720 SNP Detail

Summary

• ID
  rs255077720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4032156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGACCCCC TTACCGACAG
  AGCCCGTGGC AGCGATAATT GCAGCTTCCG ATAGGACTTC CACGATGCCG GCGCGCACAG
  TCGCCGCGCT GCGGCTGTTG GCGTCCAGGT GGCTCAGGAG CTGCTGGATA ACCAGGTGGG
  AGTGCTGCGG CTGTGGAGGA GGAAGACGTG CTGGTCCCCA AACAACAACA CCCCCCCCCC
  Y
  GCCCCCCGGC CCGGTAGCCC TCTGCTGGAA CCCAGAGGCT CAGGGTGAAC CAAAATGACA
  TCCCACAGCC AGTGGGCACT GCAGGTGGCA CCCAGACCTC GCTCTCTTTC TTGCAGCACC
  CCACCCCAAC CCCCACAAAA ACGGAGCCAA ATCCCAGGGA ATCTGTGTTT GCACATTTTC
  CCTGAATTCC TTTACTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss384985547	MGP_WTSI_12_3982156	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs255077720					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384985547	MGP_WTSI_12_3982156	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4032156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4371	CpG island 4371	within coordinates
Efr3b	EFR3 homolog B	within coordinates
Gm59670	predicted gene, 59670	within coordinates
Rr256319	regulatory region 256319	1445 bp proximal
Rr265366	regulatory region 265366	within coordinates
Rr267337	regulatory region 267337	892 bp proximal
Rr369491	regulatory region 369491	234 bp upstream
Rr403219	regulatory region 403219	490 bp downstream