rs255083958 SNP Detail

Summary

• ID
  rs255083958
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACAGAAG TATGGATGAA
  GGGGTACTCA TAGGAGCAAC TGCGTCACTC CCACACAGCA CCACAGCTCC GTGGGTGCGA
  GCGATGACTC ATTAAAGCCG CAATCCTGGA GCTCTCTGCA CTTTTGTATA CATCCTGGCA
  ATCCAAATCT CTCCTTTGTT CTTCAGTCCT TAGAATCTCC AACCCCCCAC CCCGCCCCCA
  C
  CCCCGCCCCG CCCCCCGTTG TTTACACTTT TTATACCGCT GAGAAAGAGC CCTCAAGAAT
  CTTCCAAATT TCTGCTCCTA TAGAGAACCT TTCACATCTC CACCTCCACC CCCACGCCCT
  TGGAGAGGAT GTTTGTATTT GCATGGAAAT GTTTTTACAG CAATCATTAA TAGCCTAGTC
  AGACTGAGCT ATGAGACGGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	I/LnJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398252306	MGP_WTSI_17_43704886	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	I/LnJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255083958					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398252306	MGP_WTSI_17_43704886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	386 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	181 bp upstream
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	343 bp proximal
Tssr144685	transcription start site region 144685	50 bp upstream
Tssr144686	transcription start site region 144686	159 bp upstream
Tssr144687	transcription start site region 144687	215 bp upstream
Tssr144688	transcription start site region 144688	353 bp upstream
Tssr144689	transcription start site region 144689	510 bp upstream
Tssr144690	transcription start site region 144690	545 bp upstream
Tssr144691	transcription start site region 144691	565 bp upstream
Tssr144692	transcription start site region 144692	621 bp upstream
Tssr144693	transcription start site region 144693	669 bp upstream
Tssr144694	transcription start site region 144694	704 bp upstream
Tssr144695	transcription start site region 144695	752 bp upstream
Tssr144696	transcription start site region 144696	769 bp upstream
Tssr144697	transcription start site region 144697	1459 bp upstream
Tssr148130	transcription start site region 148130	567 bp downstream