rs255086805 SNP Detail

Summary

• ID
  rs255086805
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126816495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTGCTC CTAACCAAAG
  CCATCAGGGA CAGCTGGCCA CAGTACATGA GACATCAGAA TGTGGTGGCT GCACACCTGT
  AATCTCAGCA CTCAGGAAGC TGAGGCAGGA GGATTGTCAC ATTTGAGGCC ACCATGGCCT
  ACATAGTGAG TTCCAGGCCA GCTAGGGCTA ATGTGACACC ATGGCTAAAA ACAAAAACAA
  R
  CCACAACAAC AACAAAAGCA TCGAACAAAC CAGGCATGCA TATATATACC TGTAATCTCA
  GGAGGAGGAC TTTGAGTTTC AGGCCAGTCT GGGCTACACA GTGAATTTGA GGTCCCTGAG
  CTACATAGAA AAACCTTATC TCAAAACAAG AAACACTGGA TACTTTGGGC TAGATTGTTA
  CCAGAAACAG GTGCCCCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083342	MGP_WTSI_7_134360837	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255086805					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083342	MGP_WTSI_7_134360837	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126816495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19732	CpG island 19732	1839 bp distal
Gm71806	predicted gene, 71806	1176 bp upstream
Rr368445	regulatory region 368445	694 bp upstream
Rr655747	regulatory region 655747	1862 bp distal
Rr655748	regulatory region 655748	970 bp proximal
Rr655749	regulatory region 655749	1203 bp proximal
Septin1	septin 1	within coordinates
Tssr2404	transcription start site region 2404	1189 bp upstream
Tssr74965	transcription start site region 74965	1974 bp upstream
Tssr74966	transcription start site region 74966	1880 bp upstream
Tssr74967	transcription start site region 74967	1628 bp upstream
Tssr74968	transcription start site region 74968	686 bp downstream
Tssr74969	transcription start site region 74969	1048 bp downstream
Tssr74970	transcription start site region 74970	1075 bp downstream
Tssr74971	transcription start site region 74971	1144 bp downstream
Tssr74972	transcription start site region 74972	1408 bp downstream
Tssr74973	transcription start site region 74973	1514 bp downstream