rs255092306 SNP Detail

Summary

• ID
  rs255092306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82425876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATTTCTT CTTCTTGAAA
  AGCTGGGACA AAGTTGACAG TCTTTATAGA TGAAAGGAGG TGACAGTCGG GGTTAATCCA
  AATAAATACT CACTTCTCTC ATAAATTTTA GGCAACCTCA TCTTAACTTT TAAAAGAAAG
  ACGGGACGGG AAGAGGGGGG GAATAAAAAC GAACAATCCC AAAGCATCAC TTTGTAGTGA
  R
  CTGCATCCCT TTTCTCACCC TCCCCAGAAT CTGCGGGAGG GGGCGGGGAC GCTCCACTGA
  TAATACCAGC TTTAACTACT GGAGTTTCCC TTTGAACAAA TATTCAATTT AACTGGAGTT
  AATTTACCAT AAAAGACATT CCCCTTGGCG CGAATGCACT CATGTCCTTG AACACACCTC
  TTTGAATGCC TGGACTCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362190680	MGP_WTSI_4_82153543	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255092306					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362190680	MGP_WTSI_4_82153543	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82425876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14398	CpG island 14398	260 bp distal
Gm11266	predicted gene 11266	350 bp upstream
Gm57123	predicted gene, 57123	1768 bp upstream
Nfib	nuclear factor I/B	888 bp upstream
Rr376744	regulatory region 376744	74 bp upstream
Tssr37680	transcription start site region 37680	1685 bp downstream
Tssr37681	transcription start site region 37681	307 bp upstream
Tssr37682	transcription start site region 37682	367 bp upstream
Tssr37683	transcription start site region 37683	1945 bp upstream
Tssr42253	transcription start site region 42253	1949 bp upstream
Tssr42254	transcription start site region 42254	1900 bp upstream
Tssr42255	transcription start site region 42255	1837 bp upstream
Tssr42256	transcription start site region 42256	1833 bp upstream
Tssr42257	transcription start site region 42257	1801 bp upstream
Tssr42258	transcription start site region 42258	1772 bp upstream
Tssr42259	transcription start site region 42259	1165 bp upstream