rs255094388 SNP Detail

Summary

• ID
  rs255094388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119232379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGGGC AACTGGGAGT
  GGAGAAGGGT TGAAGAGGCG AACCAACAGG TCTCAGATCG CTTCGGCCGG CACGTGGCGG
  GCGTGAGTGA CCCGCGGTCA GCTCGCAGCC GCCTGCGGGC TGTGGATAGC TGGTGCGCGT
  CTGCTTGGGA CTAGAAGGTG TGGGTGTGTA CGCACGAAGT TGTGTTGGGA AAGCGCTTTC
  Y
  CCCCCAAAGC CTAGGCACTG ATTTCTGTGT CCCGATGGTG CTGAAGCGTG CTCAACTTTG
  TAGGAGCTCC GGGGCGGGCT TAGGGCAGTT CCAGGAAACG TGGACAGTCG GGCATTAAGA
  CTCCAGAGAA AAGATCGTGG AGATTAGGAC GGCTGGTGCC CGGTGGCTGG GGCTCTGGGT
  CCTGCGCGTC TTTGTTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379136870	MGP_WTSI_9_119312431	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255094388					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379136870	MGP_WTSI_9_119312431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119232379 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	within coordinates
Cpgi22474	CpG island 22474	within coordinates
Gm47320	predicted gene, 47320	1795 bp downstream
Gm53515	predicted gene, 53515	1415 bp upstream
Gm69683	predicted gene, 69683	1845 bp upstream
Rr688480	regulatory region 688480	1856 bp distal
Rr688481	regulatory region 688481	859 bp distal
Rr688482	regulatory region 688482	1329 bp distal
Rr688483	regulatory region 688483	within coordinates
Rr688484	regulatory region 688484	772 bp distal
Rr688485	regulatory region 688485	612 bp distal
Tssr87682	transcription start site region 87682	1160 bp downstream
Tssr87683	transcription start site region 87683	1088 bp downstream
Tssr87684	transcription start site region 87684	1044 bp downstream
Tssr91983	transcription start site region 91983	162 bp downstream