rs255096621 SNP Detail

Summary

• ID
  rs255096621
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:61676062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTATTTAT TGTCTTCTGC CTAGGAAGCT
  CCCAGGGCAT GAAATATTGA TTTAGGTGTT TGCTAGGCAT GGATGACTGT GTTGCTCTTC
  TTAATATATG ATGAATTGTT TCTATGTGTG CCATTATGAG GCTGAAAAGC AAATTAACCA
  R
  GGTTATTTAA TAAACATGAA ATATAAACAC TAAGCCCTAT GCCCAGTTAC TAGTGAGGGG
  TCATGAAAGT GCACAGGGTG TACTGCTCAA ACGCTGGTGT AGCTGCAGGC TTCCGTTATC
  TACTGCAGAC ATGGATTTTG CTGCATTCCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319741941	CHEV_1_61683477	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255096621					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:61676062 () rs orientation: forward

Symbol	Name	Function Class
4930587A21Rik	RIKEN cDNA 4930587A21 gene	within coordinates
Cpgi308	CpG island 308	1702 bp proximal
Pard3b	par-3 family cell polarity regulator beta	1921 bp upstream
Rr411949	regulatory region 411949	1443 bp proximal
Tssr6971	transcription start site region 6971	1916 bp upstream
Tssr6972	transcription start site region 6972	1966 bp upstream