rs255096934 SNP Detail

Summary

• ID
  rs255096934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116551316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTGAAA GGCTGTGGTT
  AGTTTTCTGT GGGGGTTAAT AGTTGCCCTG AGGAAAAAAC AAAGGCTTTT TGTTCAGACA
  CCATACTCTC CACTTCTGTT CTGATTTGGA ATCACTGACT GCTGCAGATT TGAGGAGGAT
  CTCACTATAG AGGATAAAAC AAATTGGGTG TAGTTGTTTA ATCCCAGTAA TCAGGAGGCA
  R
  AGGCAACTGA ATTTGAAGCC AGCCTGTTCC AGGACAACCA GAGTTACCTA ATCGTGTTTC
  AAAAGAAAAA ATAATTTTTC TTTTTAAATT TTAATTTTTT TTTATTTTGT TTTTTCTTAT
  TAGGTATTTA TTTCATTTAC ATTTCCAAAG CTATCCCAAA AGTCCTCCAC CCGCTTCCCC
  ACCCACCCAC TCCCACTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277805	CHEV_4_116366724	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255096934					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116551316 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38561	transcription start site region 38561	374 bp downstream
Tssr38562	transcription start site region 38562	264 bp downstream
Tssr38563	transcription start site region 38563	159 bp downstream
Tssr38564	transcription start site region 38564	24 bp downstream
Tssr38565	transcription start site region 38565	within coordinates
Tssr38566	transcription start site region 38566	1900 bp upstream