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rs255102879 SNP Detail
Summary
  • ID
    rs255102879
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr11:94842176 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGACCTTCCT GCGCCTAATG
TCCACCGAGG CCTCCCAGAA CATCACCTAT CACTGCAAGA ACAGCGTAGC CTACATGGAC
CAGCAGACTG GCAACCTCAA GAAGGCCCTG CTCCTCCAGG GATCCAACGA GATCGAGCTC
AGAGGCGAAG GCAACAGTCG CTTCACCTAC AGCACCCTTG TGGACGGCTG CACGGTGAGT
M
CCCCAGACTG GGTCCAGCCT GTCTCTTTGG GCATCTGGTT TAGCCTTCTG GCAGAACAGA
GTGAGCCTCA CTTCATTCCT ACCTTGGTAA TGACCCTCTC CCGCTGTCTT CATTCACACC
AGAGTCACAC CGGAACTTGG GGCAAGACAG TCATCGAATA CAAAACCACC AAGACCTCCC
GCCTGCCCAT CATCGATGTG                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336266 MGP_WTSI_11_94812664 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255102879 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336266 MGP_WTSI_11_94812664 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94842176 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 1968 bp proximal
Tssr3647 transcription start site region 3647 631 bp upstream
Tssr104261 transcription start site region 104261 1916 bp downstream
Tssr104262 transcription start site region 104262 1176 bp downstream
Tssr104263 transcription start site region 104263 1043 bp downstream
Tssr104264 transcription start site region 104264 1021 bp downstream
Tssr104265 transcription start site region 104265 995 bp downstream
Tssr104266 transcription start site region 104266 983 bp downstream
Tssr104267 transcription start site region 104267 916 bp downstream
Tssr104268 transcription start site region 104268 888 bp downstream
Tssr104269 transcription start site region 104269 875 bp downstream
Tssr104270 transcription start site region 104270 854 bp downstream
Tssr104271 transcription start site region 104271 800 bp downstream
Tssr104272 transcription start site region 104272 606 bp downstream
Tssr104273 transcription start site region 104273 512 bp downstream
Tssr104274 transcription start site region 104274 494 bp downstream
Tssr104275 transcription start site region 104275 485 bp downstream
Tssr104276 transcription start site region 104276 474 bp downstream
Tssr104277 transcription start site region 104277 200 bp downstream
Tssr104278 transcription start site region 104278 179 bp downstream
Tssr104279 transcription start site region 104279 122 bp downstream
Tssr104280 transcription start site region 104280 110 bp downstream
Tssr104281 transcription start site region 104281 96 bp downstream
Tssr104282 transcription start site region 104282 26 bp downstream
Tssr104283 transcription start site region 104283 111 bp upstream
Tssr104284 transcription start site region 104284 136 bp upstream
Tssr104285 transcription start site region 104285 205 bp upstream
Tssr104286 transcription start site region 104286 227 bp upstream
Tssr104287 transcription start site region 104287 254 bp upstream
Tssr104288 transcription start site region 104288 276 bp upstream
Tssr104289 transcription start site region 104289 317 bp upstream
Tssr104290 transcription start site region 104290 363 bp upstream
Tssr104291 transcription start site region 104291 372 bp upstream
Tssr104292 transcription start site region 104292 410 bp upstream
Tssr104293 transcription start site region 104293 558 bp upstream
Tssr104294 transcription start site region 104294 595 bp upstream
Tssr104295 transcription start site region 104295 653 bp upstream
Tssr104296 transcription start site region 104296 672 bp upstream
Tssr104297 transcription start site region 104297 705 bp upstream
Tssr104298 transcription start site region 104298 743 bp upstream
Tssr104299 transcription start site region 104299 771 bp upstream
Tssr104300 transcription start site region 104300 791 bp upstream
Tssr104301 transcription start site region 104301 915 bp upstream
Tssr104302 transcription start site region 104302 927 bp upstream
Tssr104303 transcription start site region 104303 941 bp upstream
Tssr104304 transcription start site region 104304 980 bp upstream
Tssr104305 transcription start site region 104305 1005 bp upstream
Tssr104306 transcription start site region 104306 1020 bp upstream
Tssr104307 transcription start site region 104307 1036 bp upstream
Tssr104308 transcription start site region 104308 1106 bp upstream
Tssr104309 transcription start site region 104309 1126 bp upstream
Tssr104310 transcription start site region 104310 1171 bp upstream
Tssr104311 transcription start site region 104311 1267 bp upstream
Tssr104312 transcription start site region 104312 1337 bp upstream
Tssr104313 transcription start site region 104313 1353 bp upstream
Tssr104314 transcription start site region 104314 1769 bp upstream
Tssr110222 transcription start site region 110222 452 bp upstream
Tssr110223 transcription start site region 110223 93 bp upstream
Tssr110224 transcription start site region 110224 29 bp upstream
Tssr110225 transcription start site region 110225 159 bp downstream
Tssr110226 transcription start site region 110226 192 bp downstream
Tssr110227 transcription start site region 110227 231 bp downstream
Tssr110228 transcription start site region 110228 243 bp downstream
Tssr110229 transcription start site region 110229 303 bp downstream
Tssr110230 transcription start site region 110230 334 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory