rs255117343 SNP Detail

Summary

• ID
  rs255117343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81319314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGAAGTA GGCCAAGGGA
  CCTTGTCTCA AAACTCAATA GGTAATATTT TATACATAGC ATTTTTGTGT GTTCATTTTT
  ATTGAATATT TTTTTTACAT TTCAAATGAT ATCCCCCCTT TCCCGATCCC CCCCCCAAAC
  CTCCTATCCC ATTCCCCTCC TCCTGCTTCT ATGAGGGCAT GCCCCACCCA CCCACCCGCC
  Y
  TTGCATTCCC TTACACTGGG GCATCGAGCC TTCACAGGAC CAAGGGCCTC TTTTCCCATT
  GTTTTCCAAC AAGGCTGTCC TCTGCTACGT ATGTGGCTGG AGCCATGGGT CCCTCCATGT
  GTACTTCTTG GTTGGTGGTT TAGACCCTGG GAACTCTGGG TTGTTGATAA TGTTGTTTTT
  CTTATGGGGT TGCAAACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381036806	MGP_WTSI_10_80946225	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255117343					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381036806	MGP_WTSI_10_80946225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81319314 () rs orientation: forward

Symbol	Name	Function Class
Celf5	CUGBP, Elav-like family member 5	771 bp upstream
Cpgi1992	CpG island 1992	379 bp distal
Rr435679	regulatory region 435679	807 bp distal
Rr435680	regulatory region 435680	281 bp distal
Rr435681	regulatory region 435681	523 bp proximal
Rr435682	regulatory region 435682	976 bp proximal
Rr435683	regulatory region 435683	1518 bp proximal
Tssr98622	transcription start site region 98622	1367 bp upstream
Tssr98623	transcription start site region 98623	1330 bp upstream
Tssr98624	transcription start site region 98624	1127 bp upstream
Tssr98625	transcription start site region 98625	836 bp upstream
Tssr98626	transcription start site region 98626	827 bp upstream
Tssr98627	transcription start site region 98627	755 bp upstream