rs255117395 SNP Detail

Summary

• ID
  rs255117395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83464618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTGGCA GATGATATCA
  TTCTTTCTCT CTCTATAAAA GGCCCTAAAT GCTACACTAG AAAACTCGTA GAGCTGATAA
  ACACTTTCAG CCAAGTGTCA GGACACGATC TGCACATACA AAAAAACCAA TAGTCTTCCT
  ATAAGCAAAT GACAAACATA CTGAGGAAGA AATTGGGAGG AAAATCCCAC TCTCAATACC
  Y
  GCAAAATAAT ATCTTGGAAT AAACCTAATG AATAAAGCAA AAGGCCTATA CAATGAAAAC
  TCTAAAACAA TCAAAGAAGA CCCAGAAGAT GGAAAGACCA CCTATGCTCA TGGTCTAGTT
  TAATATTTTG ACAATGGTCA GCTTATCAAA AAAAATTTAT AGATTCATTG CAATTCCCAT
  CAAAATTCCA ATGCAATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072491	MGP_WTSI_11_83387294	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255117395					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072491	MGP_WTSI_11_83387294	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83464618 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452989	regulatory region 452989	1141 bp distal
Tssr103714	transcription start site region 103714	855 bp upstream
Tssr103715	transcription start site region 103715	896 bp upstream
Tssr103716	transcription start site region 103716	1558 bp upstream
Tssr109677	transcription start site region 109677	108 bp upstream
Tssr109678	transcription start site region 109678	257 bp downstream
Tssr109679	transcription start site region 109679	535 bp downstream
Tssr109680	transcription start site region 109680	797 bp downstream
Tssr109681	transcription start site region 109681	919 bp downstream
Tssr109682	transcription start site region 109682	1188 bp downstream
Tssr109683	transcription start site region 109683	1239 bp downstream
Tssr109684	transcription start site region 109684	1265 bp downstream
Tssr109685	transcription start site region 109685	1310 bp downstream
Tssr109686	transcription start site region 109686	1373 bp downstream
Tssr109687	transcription start site region 109687	1422 bp downstream
Tssr109688	transcription start site region 109688	1469 bp downstream
Tssr109689	transcription start site region 109689	1512 bp downstream
Tssr109690	transcription start site region 109690	1525 bp downstream
Tssr109691	transcription start site region 109691	1535 bp downstream
Tssr109692	transcription start site region 109692	1566 bp downstream
Tssr109693	transcription start site region 109693	1677 bp downstream