rs255127443 SNP Detail

Summary

• ID
  rs255127443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126046286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGATGACT GGCAGTGAGA
  TCTTGAGGAC CATGAGCCAC TGGGTAAAGT CCAGGGCCCG GAGCTTGAAG ATCATCTGGG
  AAGAGGACAG CAGGCATCAG GAATGACAAG TGCTTCCTCA GAAGGAAAGG GGGCCAGGGT
  GGCATAAAAT ACCACGCCCT GTGAGCACCC TGTGGACACA TGCTCTGCAT GGGCTCCCCC
  R
  GGGCAGAGAG GTGACAGCTC ACCGGCAGGG GGTCGACATA GAGGATGAGG AAGTGGAGGG
  ACATGGACAG GCAGATGGAA CCCAGCAGCC AGATGTTCAC CCAGGGTGGC ATCCGCAGTA
  GGGACTGGTT CTCAGACAGG CTAGAACAAA AGGCCAGGCA GATGGAGAGA CAGGGATACA
  GAGAAAGATG TGGTAAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068746	MGP_WTSI_7_133590628	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255127443					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068746	MGP_WTSI_7_133590628	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126046286 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	Intron
Rabep2	rabaptin, RAB GTPase binding effector protein 2	1207 bp downstream
Tssr2394	transcription start site region 2394	524 bp downstream
Tssr69022	transcription start site region 69022	1056 bp downstream
Tssr69023	transcription start site region 69023	791 bp upstream
Tssr74663	transcription start site region 74663	1060 bp upstream
Tssr74664	transcription start site region 74664	526 bp upstream
Tssr74665	transcription start site region 74665	200 bp upstream
Tssr74666	transcription start site region 74666	141 bp upstream
Tssr74667	transcription start site region 74667	113 bp upstream
Tssr74668	transcription start site region 74668	52 bp downstream
Tssr74669	transcription start site region 74669	91 bp downstream
Tssr74670	transcription start site region 74670	327 bp downstream
Tssr74671	transcription start site region 74671	370 bp downstream
Tssr74672	transcription start site region 74672	383 bp downstream
Tssr74673	transcription start site region 74673	528 bp downstream
Tssr74674	transcription start site region 74674	557 bp downstream
Tssr74675	transcription start site region 74675	566 bp downstream
Tssr74676	transcription start site region 74676	781 bp downstream
Tssr74677	transcription start site region 74677	806 bp downstream
Tssr74678	transcription start site region 74678	838 bp downstream
Tssr74679	transcription start site region 74679	862 bp downstream
Tssr74680	transcription start site region 74680	880 bp downstream
Tssr74681	transcription start site region 74681	907 bp downstream
Tssr74682	transcription start site region 74682	921 bp downstream
Tssr74683	transcription start site region 74683	1119 bp downstream
Tssr74684	transcription start site region 74684	1222 bp downstream
Tssr74685	transcription start site region 74685	1248 bp downstream
Tssr74686	transcription start site region 74686	1480 bp downstream
Tssr74687	transcription start site region 74687	1534 bp downstream
Tssr74688	transcription start site region 74688	1638 bp downstream
Tssr74689	transcription start site region 74689	1707 bp downstream