rs255137026 SNP Detail

Summary

• ID
  rs255137026
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72540215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGTTGT AGTCTGGGCT
  ATGACTAGTA TCTGTGCTAA CACTAGGAAA GGGCAGAGGG GAGGAGCCTT TGGCCTTAGG
  CAGTATATTG GTACAGCTAC TTGGGCCAAC CTGGCTTGCC TTCCCACCAG TACTACATAG
  ATCCCTGAGA GATGAGAGCA AGTTGCAGCT AAATCCTGAC GGAGGCTCCA GTTCAGGTCC
  W
  TGGATGCATG CCCACTAGGG ACACAAGCTG CCCTGGAAAG TAATAGACCC CCAAAGGACT
  GAAGTGGGCC TGGGCTAAGT GGGCCCTTCT GCTCAGGTCA TGGGAACTGG GGCTTCCCTA
  TACAGCAACA GCCAGGTAGC AAAAATAGAG CACCAAGACC AGTATGAGTG ACAGGCCAAA
  AGAGGTGCAC CCAGAGACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771615	MGP_WTSI_X_70741948	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255137026					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771615	MGP_WTSI_X_70741948	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72540215 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	676 bp downstream
Rr7747	regulatory region 7747	1478 bp distal
Tssr5634	transcription start site region 5634	1888 bp upstream
Tssr5635	transcription start site region 5635	1545 bp upstream
Tssr161228	transcription start site region 161228	2000 bp downstream
Tssr161229	transcription start site region 161229	1967 bp downstream
Tssr161230	transcription start site region 161230	1943 bp downstream
Tssr161231	transcription start site region 161231	1918 bp downstream
Tssr161232	transcription start site region 161232	1873 bp downstream
Tssr161233	transcription start site region 161233	1799 bp downstream
Tssr161234	transcription start site region 161234	1775 bp downstream
Tssr161235	transcription start site region 161235	1693 bp downstream
Tssr161236	transcription start site region 161236	1646 bp downstream
Tssr161237	transcription start site region 161237	1621 bp downstream
Tssr161238	transcription start site region 161238	1585 bp downstream
Tssr161239	transcription start site region 161239	1534 bp downstream
Tssr161240	transcription start site region 161240	1500 bp downstream
Tssr161241	transcription start site region 161241	1477 bp downstream
Tssr161242	transcription start site region 161242	1306 bp downstream
Tssr161243	transcription start site region 161243	1277 bp downstream
Tssr161244	transcription start site region 161244	1207 bp downstream
Tssr161245	transcription start site region 161245	1157 bp downstream
Tssr161246	transcription start site region 161246	1014 bp downstream
Tssr161247	transcription start site region 161247	979 bp downstream
Tssr161248	transcription start site region 161248	721 bp downstream
Tssr163547	transcription start site region 163547	1932 bp upstream
Tssr163548	transcription start site region 163548	1860 bp upstream
Tssr163549	transcription start site region 163549	1794 bp upstream
Tssr163550	transcription start site region 163550	1731 bp upstream
Tssr163551	transcription start site region 163551	1573 bp upstream
Tssr163552	transcription start site region 163552	1511 bp upstream
Tssr163553	transcription start site region 163553	1438 bp upstream
Tssr163554	transcription start site region 163554	1413 bp upstream
Tssr163555	transcription start site region 163555	1315 bp upstream