rs255141175 SNP Detail

Summary

• ID
  rs255141175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:3372512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC ATGTCTGGCC CGACTTCTCT
  R
  CACCCTGTTC ACAACTCACC CTGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325714998	CHEV_19_3322512	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255141175					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3372512 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpt1a	carnitine palmitoyltransferase 1a, liver			Intron
				mRNA-UTR
Gm58963	predicted gene, 58963			within coordinates
Rr394044	regulatory region 394044			1362 bp upstream
Rr542375	regulatory region 542375			1386 bp distal
Rr542376	regulatory region 542376			1480 bp distal
Rr542377	regulatory region 542377			within coordinates
Rr542378	regulatory region 542378			228 bp distal
Rr542379	regulatory region 542379			248 bp proximal
Rr542380	regulatory region 542380			686 bp proximal
Rr542381	regulatory region 542381			981 bp proximal
Tssr154175	transcription start site region 154175			197 bp downstream
Tssr154176	transcription start site region 154176			815 bp upstream
Tssr154177	transcription start site region 154177			828 bp upstream
Tssr157384	transcription start site region 157384			1208 bp downstream