rs255151422 SNP Detail

Summary

• ID
  rs255151422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:115149393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCTACC CCCCCCCCCC
  CAAGGAAGGA ATCCCAGTGC AGTTTCCTTG TGTTAGTTAA AACCTTGGCT TCTGTAATGG
  AATCCTTACA CTGTCTACAC TGAGTCACAT AAAAATCTCA GCTGTGATGT TACCTGTCCT
  GAGATCCACC ATAGCCCACC TTCCCAGTGT GGGTCAGACC GGCTTCTTGC CACAGACCTG
  R
  AAATCATTCA TCACCTTTAG CACTGAGGCG TCTTAGAAAA TATATAATGT GAGCACAATT
  GTTTTGTGTG TTCTTTTGAG ACAGGGTCTC ACTGGGTAGC ACTAGCTGGT CTGGAACTTA
  TTCTGCAGAT CAAGTTGGCC TCCAACTCAA GAGATCTGCT TGCTCTGCCT CCCGAGTCCT
  GGGGTTCAGG ACAGACAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484094	CHEV_10_114750544	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255151422					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115149393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	1326 bp proximal
Rab21	RAB21, member RAS oncogene family	Intron
Rr402237	regulatory region 402237	1976 bp upstream
Rr439191	regulatory region 439191	1396 bp distal
Rr439192	regulatory region 439192	214 bp distal
Tssr95806	transcription start site region 95806	1543 bp upstream
Tssr95807	transcription start site region 95807	1595 bp upstream
Tssr99318	transcription start site region 99318	1387 bp downstream
Tssr99319	transcription start site region 99319	1421 bp downstream