rs255154809 SNP Detail

Summary

• ID
  rs255154809
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCTAATA TGGATGCTGG
  GAGTTAAACT CGGGTCCTCT GGAAGAGCAG CAAGTGCTCT TAGCCACTGA GCCATTTCTG
  TAGGTCCTGG TATGTCTCTC TCTCCTCCTT CCTGGGCTCC ATCCATACTA GCCTTCTCCT
  TGCTAAGGAC TAAGCCAAAC TCTATCTTGG GACCTTTTAT TTTTATTTTT TATTATTTTT
  W
  TATTTTTATA TATATATTTT TTTTTGCCCA GAAACCATTC AGCTTTGGGT ATAAATACTT
  CTTCCCTTTT TTCTTCTTTT TTTCCTTTTT AAAAATATTT GTTTGTTTAA TGTATGTAAG
  TATACTGTTG CTATCTTCAG ACACACCAGA AGAGGGCATC CAATCCCATT ACAGATGGTT
  GTGAGCCACC ATGTGGTTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743399	MGP_WTSI_7_19759788	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255154809					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743399	MGP_WTSI_7_19759788	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1245 bp distal
Cpgi18450	CpG island 18450	1855 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1982 bp upstream
Gm71808	predicted gene, 71808	1660 bp downstream
Rr155270	regulatory region 155270	964 bp distal
Rr155271	regulatory region 155271	37 bp proximal
Rr167137	regulatory region 167137	1163 bp distal
Rr167138	regulatory region 167138	1036 bp proximal
Tssr64790	transcription start site region 64790	1977 bp upstream