rs255160411 SNP Detail

Summary

• ID
  rs255160411
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63218134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTACAT TTAAGCAGAA
  GATAACCAAC TTTGTGAAAC ATCTTTTCTC TGTACAGGAA AGTGAGGAAG CAAAGAAGCT
  ACGAGAAGAA CGCCTTGCAC AGTATGAGTC CAAGAAAGCT AAAAGTGGGT AATCTTCATT
  GTTAGTAGTG TTGATTTCAG GAGCTTGTCC AGTGCTTGCC CTAAAGTGGA TTTTCCCCAG
  W
  TAAATTGAAT GGGTCAATAT TTTAAAACTT CCACAGCTAC TGGTCTACAG CTGTCTTTAT
  GGTAGCAGTT GTAGCATTCC TCTGTGGGAA AGAAACTGTT ACACAATTTA ATGCCTCTTT
  CTTAGCCACA CAGGAGGAGG ATTATGTGTG ACAGACACAA GGCAAATTGT GTGTGTGTTT
  GACAAAAAGA TGGTCTGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss349860598	MGP_WTSI_1_63225549	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs255160411					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349860598	MGP_WTSI_1_63225549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63218134 () rs orientation: forward

Symbol	Name	Function Class
Cpgi313	CpG island 313	1429 bp distal
Eef1b2	eukaryotic translation elongation factor 1 beta 2	within coordinates
Gm26457	predicted gene, 26457	221 bp downstream
Gm56065	predicted gene, 56065	817 bp downstream
Rr17014	regulatory region 17014	1667 bp proximal
Rr29527	regulatory region 29527	133 bp distal
Snora41	small nucleolar RNA, H/ACA box 41	48 bp upstream
Tssr7055	transcription start site region 7055	1921 bp downstream
Tssr7056	transcription start site region 7056	1879 bp downstream
Tssr7057	transcription start site region 7057	1830 bp downstream
Tssr7058	transcription start site region 7058	1215 bp downstream
Tssr7059	transcription start site region 7059	495 bp downstream
Tssr11884	transcription start site region 11884	79 bp upstream