rs255176241 SNP Detail

Summary

• ID
  rs255176241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69805069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGCTACGA GGGAGGGGCG GGGGCGCGGA
  GCCTAAGACC CTCGCACGCG CCCCGGCGCT GAGGCAGAGA CCCCGGAGGG ACGCTGGTGC
  CCGGGACACG TGATCGAAGT GGCGAGCGGG CGGCGGACGG GCTTCCGCTT CGGCGCGTCG
  Y
  AGTCTCTCTA AGCTCCCACT TCCCTGCAGG CCCCGCCTGA GGTCTGGCAG TCAGTGAGAG
  TCGGGTGCCC ACTGCCCAAG CGTCACCAAC AGCATCATGC CCGCACTCCT GGAGCGCCCC
  AAGCTTTCCA ACGCTATGGC CAGGGCTCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323732163	CHEV_11_69727745	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255176241					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69805069 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3157	CpG island 3157	within coordinates
Gps2	G protein pathway suppressor 2	within coordinates
Neurl4	neuralized E3 ubiquitin protein ligase 4	421 bp downstream
Rr235842	regulatory region 235842	1532 bp proximal
Rr247070	regulatory region 247070	within coordinates
Rr402680	regulatory region 402680	155 bp downstream
Tssr102552	transcription start site region 102552	165 bp downstream
Tssr102553	transcription start site region 102553	80 bp downstream
Tssr102554	transcription start site region 102554	50 bp downstream
Tssr102555	transcription start site region 102555	within coordinates
Tssr102556	transcription start site region 102556	43 bp upstream
Tssr102557	transcription start site region 102557	1797 bp upstream