rs255177902 SNP Detail

Summary

• ID
  rs255177902
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGTTCC TCCCAGGCAG
  GTGGCCCAGA TTACAGTTGA CCTGTTCTGG TGTGGCTAAA AATTGTCCCA TGTGGTTACA
  AACCATTAGA CCAGGGTCTG ATGAATTGCT CAGAATATTT CTGGACACCC AAATACAGAC
  CCTGGCTTAA GGCCCTGTCC ATACAGTAGG TTTAGCTTGG CTACACCAAA GGAAGCCATA
  S
  AGAGGCTAAT ATCAGAGTAT TCTTGGAAGA GACAGGAGAA AATGAAAGCC AGTTTCTGCT
  CTTACCTTAT GTGCTTGTGT TCAGACTCCC AAACATCAGG AGTGTCAGAT AAACTGGTCT
  GAATCTCTGT CTGAAGCATG GAACTGAAAA GAATGTAGTT TCAGGGAAGA AAGGCAATAG
  AAGGAAGCCT GAGAATATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815797	CHEV_6_70676000	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255177902					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702990 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	440 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	429 bp upstream
Rr158	regulatory region 158	55 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	571 bp downstream
Rr399685	regulatory region 399685	159 bp downstream
Rr399686	regulatory region 399686	505 bp upstream
Tssr1880	transcription start site region 1880	844 bp upstream
Tssr56956	transcription start site region 56956	173 bp downstream
Tssr56957	transcription start site region 56957	424 bp upstream
Tssr56958	transcription start site region 56958	471 bp upstream
Tssr56959	transcription start site region 56959	489 bp upstream
Tssr56960	transcription start site region 56960	512 bp upstream
Tssr56961	transcription start site region 56961	526 bp upstream
Tssr56962	transcription start site region 56962	534 bp upstream
Tssr56963	transcription start site region 56963	583 bp upstream
Tssr56964	transcription start site region 56964	598 bp upstream
Tssr56965	transcription start site region 56965	604 bp upstream
Tssr56966	transcription start site region 56966	615 bp upstream
Tssr56967	transcription start site region 56967	630 bp upstream
Tssr56968	transcription start site region 56968	654 bp upstream
Tssr56969	transcription start site region 56969	690 bp upstream
Tssr56970	transcription start site region 56970	703 bp upstream
Tssr56971	transcription start site region 56971	723 bp upstream
Tssr56972	transcription start site region 56972	749 bp upstream
Tssr56973	transcription start site region 56973	787 bp upstream
Tssr56974	transcription start site region 56974	819 bp upstream
Tssr56975	transcription start site region 56975	852 bp upstream
Tssr61321	transcription start site region 61321	476 bp downstream
Tssr61322	transcription start site region 61322	641 bp downstream
Tssr61323	transcription start site region 61323	656 bp downstream
Tssr61324	transcription start site region 61324	746 bp downstream
Tssr61325	transcription start site region 61325	812 bp downstream
Tssr61326	transcription start site region 61326	847 bp downstream
Tssr61327	transcription start site region 61327	861 bp downstream
Tssr61328	transcription start site region 61328	952 bp downstream