rs255178821 SNP Detail

Summary

• ID
  rs255178821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23719594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATCGGGT GTGCAGGAGT
  TAACCAATCA CCACTTGAAT TCCTCAGCCA ATAGTACTAC TGCGCGGGAC ACTTGAAAAG
  CAGACACGCC TATCAGGATG CTTCTCGGTG GGAAGGAGGG GTACGAGCGC GGGTACGTGT
  GTTGCGCGTG TGCGAACGCA AGCGTACTTA AAGGCCAAAG TGCGCTACTT AGGTATCTCA
  Y
  TTTTCCCTAC GGTTACTTGC CATGGCTCGT ACTAAGCAGA CCGCTCGCAA GTCTACCGGC
  GGCAAGGCCC CGCGCAAGCA GCTGGCCACC AAGGCCGCCC GCAAGAGCGC CCCGGCCACC
  GGCGGCGTGA AGAAGCCTCA CCGCTACCGT CCCGGCACTG TGGCGCTGCG CGAGATCCGG
  CGCTACCAGA AGTCGACCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289731	CHEV_13_23627293	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255178821					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23719594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	within coordinates
Gm55640	predicted gene, 55640	1170 bp upstream
Gm60769	predicted gene, 60769	1721 bp upstream
H2ac10	H2A clustered histone 10	1120 bp downstream
H3c8	H3 clustered histone 8	within coordinates
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	1482 bp downstream
Rr403648	regulatory region 403648	within coordinates
Tssr4007	transcription start site region 4007	1719 bp upstream
Tssr118828	transcription start site region 118828	1542 bp downstream
Tssr118829	transcription start site region 118829	within coordinates
Tssr121712	transcription start site region 121712	1763 bp upstream
Tssr121713	transcription start site region 121713	205 bp upstream