rs255182680 SNP Detail

Summary

• ID
  rs255182680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24913305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGATTAGA GAGTCAGTAC
  GCTAAACTCT TGAATACATC CAGAAATCAA CTACAGAAAC AAGTGTTGGC TCAGATGCAC
  TTTAATCGTC AATCAGGCTG TTGCCCATAG AACCAGGCTA GATGCCCCTC ACGAACTGCT
  GGTAATCTTC TAGTCACAGG AGCCGTCCTT CCAGCCGTCA CGCCAACGCT CATCTACTCT
  Y
  GAGCAGTCAA AATCAGGCTT GCCCAGCTTC CGATTCACCT CATTGTGCAG GCGGCACAGC
  CACTGGCTGA AGGATACTCG AGTGCTTGTG TCTGGCTGGT TCCTGCCTAT CCTTTGAGAG
  AAGCACAGAA GGATGTAAGG AGATCCCGGC CCCTCTGTCT CTGCCAGTGT CTGGAGACGG
  GAGTTGGGGC ACTGCTATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397861044	MGP_WTSI_17_24831276	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255182680					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397861044	MGP_WTSI_17_24831276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24913305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	1273 bp proximal
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Noxo1	NADPH oxidase organizer 1	1903 bp upstream
Rr523392	regulatory region 523392	1365 bp proximal
Rr523393	regulatory region 523393	1727 bp proximal
Tssr143060	transcription start site region 143060	1945 bp upstream
Tssr146764	transcription start site region 146764	1656 bp downstream
Tssr146765	transcription start site region 146765	1734 bp downstream
Tssr146766	transcription start site region 146766	1790 bp downstream
Tssr146767	transcription start site region 146767	1816 bp downstream
Tssr146768	transcription start site region 146768	1866 bp downstream