rs255183373 SNP Detail

Summary

• ID
  rs255183373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59039537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATGCCG AGGTTCCTCC
  ATGTGCTTAA GCCAACTTTG AATGCTTCCA CCCAGCACTG GACCTGGAGC ATTTTCTCTG
  GTCTTTCTTA GATTTCTCTC TCTTTTTTTT TTGGTCTCAC CATTTTCCCC TCCCGCCCAA
  CTCTGTCTTA CCGAATCAAA AGTAAAAGTT CCTCAAACTG TCTCGTATCT CCTAAGCAAC
  Y
  ATCAAACTGT TCTTCTAGCA TCCTTTGCAG ATGCATTAGA AAATAGTTCC TGTGTGCTGT
  CTTCACTTCC CTTCTACCTT GTAATCTATT TTCCTGTGTG ACTTCATGGA AACTGCACAA
  ATCCAGCCCC ACTACCCATT GCTCAGCCTA CTCGTTATTT TTAAAAGATA TATAAAGGCA
  GCATTTGTTT TTTAATTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358113077	MGP_WTSI_3_58936038	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255183373					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358113077	MGP_WTSI_3_58936038	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59039537 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Tssr29228	transcription start site region 29228	250 bp downstream
Tssr29229	transcription start site region 29229	179 bp upstream
Tssr33381	transcription start site region 33381	1573 bp upstream
Tssr33382	transcription start site region 33382	1513 bp upstream
Tssr33383	transcription start site region 33383	1488 bp upstream
Tssr33384	transcription start site region 33384	1476 bp upstream
Tssr33385	transcription start site region 33385	1456 bp upstream
Tssr33386	transcription start site region 33386	1425 bp upstream
Tssr33387	transcription start site region 33387	1352 bp upstream
Tssr33388	transcription start site region 33388	1035 bp upstream
Tssr33389	transcription start site region 33389	1022 bp upstream
Tssr33390	transcription start site region 33390	975 bp upstream
Tssr33391	transcription start site region 33391	877 bp upstream