rs255220450 SNP Detail

Summary

• ID
  rs255220450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42152869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCTCCT CCCTTCCACG
  AGCAGGGCGG CCGCGGCAGC AGCACAAAGT TATAGCCACT CACAGGGAGC CTCAACCTAG
  GATGACGGCG GGGCGGGTCC CCGCCCAGGG GGAGGGCTGG GGCGGGGGCC GGGAGGGCTG
  CTGTGCGTGC GTGTGGGAGT GCGCGTGTGT GCGCCCTCGC GCCTGCGCGG GGCTGCGGGA
  R
  TGGGGGCGGG CGCGCGCGGG TCGGGACTCG GCCGGCTCCG CAGCCCTCCC GGTTGGGGTC
  CCGCGCTCTC CTGGGGACCT CAGCGGCCAC GCTGGCCCGG GACGGGAGGC CAGGTCAGAC
  AACACACCAC TGCGCGCCGC CCCGCGCTCT CAGCCTTGGG CCCTGCGTTT GGCTCGTGGG
  CCCGTGGCCT GCCCGTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss380164387	MGP_WTSI_10_41996679	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs255220450					SNP	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380164387	MGP_WTSI_10_41996679	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42152869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1479	CpG island 1479	within coordinates
Foxo3	forkhead box O3	178 bp upstream
Gm56983	predicted gene, 56983	12 bp downstream
Gm66047	predicted gene, 66047	within coordinates
Rr401852	regulatory region 401852	687 bp upstream
Rr430524	regulatory region 430524	within coordinates
Rr430525	regulatory region 430525	6 bp proximal
Rr430526	regulatory region 430526	840 bp proximal
Tssr93079	transcription start site region 93079	19 bp upstream
Tssr97433	transcription start site region 97433	1221 bp upstream
Tssr97434	transcription start site region 97434	217 bp upstream
Tssr97435	transcription start site region 97435	192 bp upstream
Tssr97436	transcription start site region 97436	130 bp upstream
Tssr97437	transcription start site region 97437	110 bp upstream
Tssr97438	transcription start site region 97438	727 bp downstream
Tssr97439	transcription start site region 97439	762 bp downstream