rs255226830 SNP Detail

Summary

• ID
  rs255226830
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117013558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGGGGCC GCGGCGAGCC
  TGGGACGCTG GCACAGGGGA GGGTCCTGCG GCGTGCGAAC TCACGCGGAC CCCGCCTCAA
  ATCCCTTGAC CTTGGGCGGT CTGGAGGGCG GGCTCCTTAA GCTGAGCTAT AGGGCACACT
  TGCCTGCCTG TTGTGCTTAC ATTTTGTCCT TTAAATTTTT TTTTTTTTTT TTTTTTTTAA
  R
  CCGGGCGTGG TGGCGCACGC CTTTAATCCC AGCACTCGGG AGACAGAGGC AGGCGAATTT
  CTGAGTTTGA GGCCAACCTG GTCTACAAAG TGAGTTCTAG GACAGCCAGG GCTATACAGA
  GAAACCCTTG TAAACTTGTA AAACCAAAAA AGAAAAAAGA GTAAAGGGCC CTAATTGGAA
  AAGTGAAGTA GTAGAAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
ss362964238	MGP_WTSI_4_116828966	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	G	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
rs255226830					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	G	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362964238	MGP_WTSI_4_116828966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117013558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	33 bp distal
Gm26330	predicted gene, 26330	1072 bp upstream
Gm55786	predicted gene, 55786	1948 bp downstream
Rps8	ribosomal protein S8	229 bp upstream
Rr377051	regulatory region 377051	1849 bp downstream
Rr398411	regulatory region 398411	141 bp downstream
Rr598069	regulatory region 598069	within coordinates
Snord38a	small nucleolar RNA, C/D box 38A	1787 bp upstream
Snord55	small nucleolar RNA, C/D box 55	513 bp upstream
Tssr42956	transcription start site region 42956	513 bp upstream
Tssr42957	transcription start site region 42957	276 bp upstream
Tssr42958	transcription start site region 42958	218 bp upstream
Tssr42959	transcription start site region 42959	187 bp upstream
Tssr42960	transcription start site region 42960	164 bp upstream
Tssr42961	transcription start site region 42961	134 bp upstream