rs255234708 SNP Detail

Summary

• ID
  rs255234708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32418578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCTCTGT TAGATCATAG
  AGAAAGGACA GGGCAGGATA TCAAAACATC TGGATATAGA AAATCAGCAA TATACATAGA
  GAACCGAATC AGCATGCTCC CAAGACATGC CTGGGCTTGT TTCTCACATG CTTACTCCCA
  CCTGATGAAA CCCCAGCATG CGTGGCCCCA GAATCATGCA GCAGTCCTGC AGAAACAAGG
  Y
  CCTCCTCCCA GCAGAGGCAC AAAAAGGCCT TATTTCAAAG CAAAACACTG GCCGGCCGGG
  TGGGGTGGGG GTGTTTACAG TGCAGGTTTA CCTATTATTA CATTTTATGT TCATAATGTT
  CAAAGAAAGA ATAGAGACCT CAAAAATACT GTTAGATTTA ATAATCAACA TAAGGTTAAA
  AAAAAAAGCC CTCCCCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320697909	CHEV_3_32263351	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255234708					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32418578 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	1060 bp upstream
Cpgi13055	CpG island 13055	515 bp proximal
Rr77496	regulatory region 77496	within coordinates
Rr374783	regulatory region 374783	within coordinates
Tssr28742	transcription start site region 28742	25 bp downstream
Tssr28743	transcription start site region 28743	482 bp upstream
Tssr28744	transcription start site region 28744	877 bp upstream
Tssr28745	transcription start site region 28745	907 bp upstream
Tssr32923	transcription start site region 32923	715 bp downstream
Tssr32924	transcription start site region 32924	754 bp downstream
Tssr32925	transcription start site region 32925	994 bp downstream
Tssr32926	transcription start site region 32926	1179 bp downstream
Tssr32927	transcription start site region 32927	1214 bp downstream
Tssr32928	transcription start site region 32928	1463 bp downstream
Zmat3	zinc finger matrin type 3	within coordinates