rs255240594 SNP Detail

Summary

• ID
  rs255240594
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137743479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTCTACC CTACCACCAA
  CAGCCTTCTT GGATAGTTTG CTTTCTCCAA TTTTCCCTTT TTAAGAGAGG GAAACACCGT
  ATCAGAGATT TGATTTCATA TACTGGAGCA GGAGCAGGAT AGACAGGATG GCTCAGTGGG
  TAAAGGGCCT TACCACCAAA CCGGATGGTT GGCACTATTC CATCCTTGGA CCCACATAGT
  K
  GAAGAGAAAA CTGACTCCTT CAAGTTGACC TCCAGATCTA CACATACATA CATTCACAGT
  AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAATTCA AATATTGCAG CAAAATCCGA
  GAAAAGATAT TGGAGGAATA AAACACGTTT GGGTACAGCT GATACTTGTT ACAAGTCCAT
  GATGGCGTGT ATGGGCGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366884366	MGP_WTSI_5_138186445	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255240594					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366884366	MGP_WTSI_5_138186445	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137743479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16849	CpG island 16849	790 bp proximal
Gm57848	predicted gene, 57848	795 bp upstream
Gm68923	predicted gene, 68923	1767 bp upstream
Rr622970	regulatory region 622970	685 bp distal
Rr622971	regulatory region 622971	23 bp proximal
Rr622972	regulatory region 622972	1277 bp proximal
Tsc22d4	Tsc22 domain family, member 4	795 bp upstream
Tssr49366	transcription start site region 49366	534 bp upstream
Tssr49367	transcription start site region 49367	736 bp upstream
Tssr49368	transcription start site region 49368	750 bp upstream
Tssr49369	transcription start site region 49369	896 bp upstream
Tssr49370	transcription start site region 49370	966 bp upstream
Tssr49371	transcription start site region 49371	1021 bp upstream
Tssr49372	transcription start site region 49372	1138 bp upstream
Tssr49373	transcription start site region 49373	1330 bp upstream
Tssr49374	transcription start site region 49374	1422 bp upstream
Tssr49375	transcription start site region 49375	1473 bp upstream
Tssr49376	transcription start site region 49376	1668 bp upstream
Tssr49377	transcription start site region 49377	1735 bp upstream
Tssr49378	transcription start site region 49378	1849 bp upstream