rs255258178 SNP Detail

Summary

• ID
  rs255258178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102059185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCATCA GGTGTCTCAG
  CGCCATAACT AATTCTCTAG GCAAGGGTCT GTTGTTTGAT GTTTTTGTAG GCTGGCAGTT
  TGGCAAGGCC TACATCAGCA GTTCTCAACC TTTGGGTCAT GGCCCCTTTG GGGAAGGGTT
  GAATGATCTT TCTCAGGAAT CTTCTAAGAC CATCGGAAAA AATACAGATG TCTACATTAT
  R
  ATTCATAGCA GAGCAAAATT GTGTTATGAA GTAGCAACCA AAATAAATGT ATGGTTGGGA
  ATCACCACAA CATTAGAGAC TGTATTAAAG GGTCACAGCC TTAGGAAGGT TGGGAACCAC
  TGTTCTACAT GAATGAATTC ACCAGGGAAC GCACCTGGCC ATGTCTGAAG GCTCAGAGAG
  ACAGAAAGAC AGGCAAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854660	CHEV_3_101955792	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255258178					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102059185 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	within coordinates
Rr582191	regulatory region 582191	1563 bp distal
Rr582192	regulatory region 582192	330 bp proximal
Vangl1	VANGL planar cell polarity 1	1714 bp downstream