rs255264997 SNP Detail

Summary

• ID
  rs255264997
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53746677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCGCCA CGCGCCCACC
  GCCCCGCCCC GCCCCGCCTC GCGGGCGCCT GTCGGACCCT GCCTTCCGCG TCCCGGGAGC
  CGCACGGGAC GAACACCTGT CGGGGCCCCG GCTCTGCGCG ATGTAGGGCG CACGCCCAGC
  CGCCCGCGGG GTGGGTAGGA GAGCGCGTTC TCGCGAGGCT TAGGAAATTT CCCACGGCCC
  K
  TGTTGTGTCT GAGCCGAGCG GTGGAAGGCG CTCGGGAGGA GGTGTAGCGT GAGACTCCGG
  CTGCCCGCAT TGCGCACATG CGCAGTGGCG CGAGCGCGCC GCGCCAATCC TGCGGCGCTC
  CGGAGCGGGT CTCGGGCGGG CTGATCCAGT TCTCCGGGTT TTTTGTGGCT CCCTGCGGGA
  GGCAGGCAAT GCAGGAGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364963838	MGP_WTSI_5_53980574	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255264997					SNP	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963838	MGP_WTSI_5_53980574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53746677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	249 bp downstream
Rr611644	regulatory region 611644	612 bp distal
Rr611645	regulatory region 611645	14 bp proximal
Rr611646	regulatory region 611646	389 bp proximal
Rr611647	regulatory region 611647	1156 bp proximal
Rr611648	regulatory region 611648	1657 bp proximal
Tssr46224	transcription start site region 46224	568 bp downstream
Tssr46225	transcription start site region 46225	370 bp downstream
Tssr46226	transcription start site region 46226	94 bp upstream
Tssr46227	transcription start site region 46227	1004 bp upstream
Tssr46228	transcription start site region 46228	1018 bp upstream
Tssr46229	transcription start site region 46229	1087 bp upstream
Tssr46230	transcription start site region 46230	1118 bp upstream
Tssr46231	transcription start site region 46231	1321 bp upstream
Tssr46232	transcription start site region 46232	1338 bp upstream
Tssr46233	transcription start site region 46233	1386 bp upstream
Tssr46234	transcription start site region 46234	1724 bp upstream
Tssr46235	transcription start site region 46235	1898 bp upstream
Tssr46236	transcription start site region 46236	1913 bp upstream
Tssr51023	transcription start site region 51023	70 bp upstream
Tssr51024	transcription start site region 51024	843 bp downstream
Tssr51025	transcription start site region 51025	1237 bp downstream