rs255285253 SNP Detail

Summary

• ID
  rs255285253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:61909227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTTGACTA AATGGTACTA
  GAGACGTGCA CCTGTTCGGT GCTGGATTGA ATACAGCGAA AAGAATATCG TGGTATACGC
  GTGCCTTTCA CACCAGCCTT CGTTCTTTGC AGAGGCTTTT GCACATTTGA GAGGTTAGTG
  TAATACCCTG TACGGACCAA GAATGGAGGA TGCTGCAGAC AGGTGGTCCT CTCTCAGCTA
  R
  AGTTTGCTTA GTACGTCCTT CTCTCCAGAA CCACAGATGA TGGATGGTAC CCAGGACTGC
  TCTCAGATGA GAGTTCTGAA ATAGAACAGA TTCGGGGGGG TCTTCTGTAG GAACTACTGA
  CCTATTTTCT GAGCAGTTTG GTCCTTTTAA TTCACTGGAG TCTCCTTCCC TATCCGAAAA
  GTGGGAAGAC TGCTAAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394270320	MGP_WTSI_15_61868933	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255285253					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394270320	MGP_WTSI_15_61868933	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:61909227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7132	CpG island 7132	105 bp distal
Cpgi7133	CpG island 7133	258 bp proximal
Gm54427	predicted gene, 54427	651 bp upstream
Pvt1	Pvt1 oncogene	608 bp upstream
Rr390819	regulatory region 390819	988 bp upstream
Rr503088	regulatory region 503088	94 bp proximal
Rr503089	regulatory region 503089	1252 bp proximal
Tssr131427	transcription start site region 131427	618 bp upstream
Tssr131428	transcription start site region 131428	1838 bp upstream
Tssr131429	transcription start site region 131429	1906 bp upstream
Tssr134486	transcription start site region 134486	1760 bp downstream
Tssr134487	transcription start site region 134487	1781 bp downstream