rs255300447 SNP Detail

Summary

• ID
  rs255300447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54623506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gctggtccc tcaggggtaa ggaatgcctc
  agcatgggcc cactgagaca tcccctttcc ccacacctca ccacacctag ctagaacata
  tccttATATC tctttctttc tttctctctc tttctttctt tctttcttcc ttccttcctt
  Y
  cttccttcct ttctttcttt ctttctttct ttctttcttt ctttctttct ttctttcttt
  ctttctttct ttTATAATCA CAACAATTTT GAACTCAACA CACCAAAGGC CCAAAGCAGC
  TGTCTTGAGC ATTTCAGTTT GGTGGCTGTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319725743	CHEV_1_54641191	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255300447					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54623506 () rs orientation: forward

Symbol	Name	Function Class
Rr33896	regulatory region 33896	within coordinates
Rr371299	regulatory region 371299	667 bp upstream
Tssr86	transcription start site region 86	467 bp downstream
Tssr6704	transcription start site region 6704	1386 bp upstream
Tssr11691	transcription start site region 11691	843 bp downstream
Tssr11692	transcription start site region 11692	1104 bp downstream