rs255302331 SNP Detail

Summary

• ID
  rs255302331
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133857855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTAGAGA AACACAAAAC
  ACCAGAAAAC ACTCAACACT TTTTTTTTAT CTTAGGTGCT CCGAACTGTC AAGGTTAGAG
  CAGGAAAAGG GAACCCTCCT AACCCCAAAT GAGAGGCACA GTTCAGAGGA CAGCGACAGC
  GCCCAGCCTT AGGAAGGACT GAGCAGCCAC AGCCACCCTG TGCTCTTACG GGGGAAACTC
  M
  TGTCCAACCC GGGAACCACG AGGCAACCAC AGAGGAGTCT GTACTCCTAG ACGACATAGC
  GGACCCAAGC ACATGCCCAC ATGCCCAAGG TTCTAGGGAC AGACAATGGG TAGCTAGGAA
  GAGTTTCCTG TAAAAGATGG CCCAGCAGGC AGGCCGAGGA GCCCTGCCAT GGTCCCCAAG
  TCAGTGATCA TAGTAGGGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363332309	MGP_WTSI_4_133686459	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255302331					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363332309	MGP_WTSI_4_133686459	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133857855 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	within coordinates
Cpgi15028	CpG island 15028	1424 bp distal
Gm68742	predicted gene, 68742	933 bp upstream
Rr601575	regulatory region 601575	1265 bp distal
Rr601576	regulatory region 601576	684 bp distal
Rr601577	regulatory region 601577	844 bp distal
Rr601578	regulatory region 601578	696 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1811 bp upstream
Tssr43875	transcription start site region 43875	1844 bp upstream
Tssr43876	transcription start site region 43876	1774 bp upstream
Tssr43877	transcription start site region 43877	933 bp upstream