rs255305367 SNP Detail

Summary

• ID
  rs255305367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:83532999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCCTTC CTTTGAAATC
  AAAATCCTCT GCTCCTAGAG GAGCGCGGGC GGCGGCCCCG GCAGGCTTTG CTGTCAGCCG
  CTGCGCTGCG GCTATCCGGC TCAGCAGCGC ACGTGGGCTT CAGGGGCGGC GACCCCGCCA
  GACGGTACAG GCTGGCGACG GCGGCCGGAG CTGACGCCCG GGGGCGCGCG GCCGCATCTC
  Y
  TGCTCCGGCT CTTAGGGCGC TGGGCGGCCA CTGGGCCGAG GGCGTGGCTG GCTCTGTGGC
  GGCCGCGCGG AGTCAGTCGG GCGGGAGGCT GCAACGCAGG GTGCTGGGCG GCCGCGCCTT
  CCCGCCTGGC GGTTCAGAGT GCGCGGCCCG GCGCCGCGGC GGCACGCCCT CCCCTCCTGA
  ATGGCCTGCG GCCGGCGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372126301	MGP_WTSI_7_91032301	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255305367					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372126301	MGP_WTSI_7_91032301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83532999 () rs orientation: forward

Symbol	Name	Function Class
2310034P14Rik	RIKEN cDNA 2310034P14 gene	1120 bp upstream
Mesd	mesoderm development LRP chaperone	75 bp upstream
Rr400419	regulatory region 400419	485 bp upstream
Rr650493	regulatory region 650493	10 bp distal
Rr650494	regulatory region 650494	432 bp proximal
Rr650495	regulatory region 650495	504 bp proximal
Tlnrd1	talin rod domain containing 1	mRNA-UTR
Tssr2320	transcription start site region 2320	1571 bp downstream
Tssr67581	transcription start site region 67581	146 bp downstream
Tssr67582	transcription start site region 67582	123 bp downstream
Tssr67583	transcription start site region 67583	51 bp downstream
Tssr67584	transcription start site region 67584	66 bp upstream
Tssr73402	transcription start site region 73402	321 bp upstream
Tssr73403	transcription start site region 73403	221 bp upstream
Tssr73404	transcription start site region 73404	7 bp downstream
Tssr73405	transcription start site region 73405	363 bp downstream
Tssr73406	transcription start site region 73406	422 bp downstream
Tssr73407	transcription start site region 73407	471 bp downstream
Tssr73408	transcription start site region 73408	498 bp downstream
Tssr73409	transcription start site region 73409	533 bp downstream