rs255312463 SNP Detail

Summary

• ID
  rs255312463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58423641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGAGTT CTAGCCCCAG
  AATAAATGTA AAAGCTCCCA GCGTGGTATA TCAAGCTCTG GTCCCAAAGA TTAGCGGGCA
  GAAACAGGTG GATCCCTCGG TCTTGTTAGC TACCCTCCCA CTCTCCACAA AAAGATAGCA
  CCTGACAAAT GATAACCACA CCCCCTCCCA GCATGTGCAT GAACAACACA CACAAGGATC
  R
  GAAACTCCTC AGCTTAGTAG CGTATTGCTA TAAGAGAAGG GGGCAGACTC AGTCTAGAAA
  TACATCATCA TTAGAGTCTT GCTACCCCAA AGTTGACCAC ATGTGTGTCA CCAGCAAGTT
  TGTCAGAAAC GTGTGGATCT CGGGCCTAAC ACACACCTGC CCATTAGAAT CTGCAACCTC
  AAAGAAATTC CAAGAGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388759198	MGP_WTSI_13_58377188	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255312463					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388759198	MGP_WTSI_13_58377188	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58423641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	568 bp distal
Gkap1	G kinase anchoring protein 1	950 bp upstream
Rr481008	regulatory region 481008	1650 bp distal
Rr481009	regulatory region 481009	1149 bp distal
Tssr120072	transcription start site region 120072	1547 bp downstream
Tssr122823	transcription start site region 122823	1712 bp upstream
Tssr122824	transcription start site region 122824	1620 bp upstream
Tssr122825	transcription start site region 122825	1489 bp upstream
Tssr122826	transcription start site region 122826	1463 bp upstream
Tssr122827	transcription start site region 122827	1450 bp upstream
Tssr122828	transcription start site region 122828	1332 bp upstream
Tssr122829	transcription start site region 122829	1309 bp upstream
Tssr122830	transcription start site region 122830	976 bp upstream
Tssr122831	transcription start site region 122831	176 bp upstream
Tssr122832	transcription start site region 122832	124 bp upstream