rs255323411 SNP Detail

Summary

• ID
  rs255323411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39596326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAAAAGA ATTCAACCTC
  ATATAAAATG AAGACTCATC TCTTATATAT GAAATAAGTG GGCCTATACT CTCTGAACAA
  AATGTATGAG AATGCGAGTC TCTGCTTAGC TAAGAACAGA AATTGGTCTC ACATAAATGT
  CAAGAGTGGA AAAGCTGGTT TAGAATCACT CAAAAAAGAC AACTGAGCAT AAGCTTACAG
  Y
  GCATTTAAGG AAGGGAATTA GATTCTGTCA AGGAAACAAT TCATCAAGCT CTGTGTTTTC
  TCATTTAAAA TTCTGAACCA TGAAGACTCA ACCTCTTGTT GAACTGCAGC TTGTACATAG
  AGGGCATGAA CCAGGCCCAT GAGGGAGGTA TGCTATCTCA GGCTAAAGGG ACAGATAATG
  AAAAGCTGTC AATAAAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349326880	MGP_WTSI_1_39614090	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255323411					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349326880	MGP_WTSI_1_39614090	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39596326 () rs orientation: forward

Symbol	Name	Function Class
Rnf149	ring finger protein 149	within coordinates
Rr409899	regulatory region 409899	875 bp distal
Rr409900	regulatory region 409900	1828 bp proximal
Tssr6390	transcription start site region 6390	1760 bp downstream
Tssr11384	transcription start site region 11384	1702 bp upstream
Tssr11385	transcription start site region 11385	1572 bp upstream
Tssr11386	transcription start site region 11386	1223 bp upstream
Tssr11387	transcription start site region 11387	574 bp downstream
Tssr11388	transcription start site region 11388	1056 bp downstream
Tssr11389	transcription start site region 11389	1117 bp downstream
Tssr11390	transcription start site region 11390	1686 bp downstream
Tssr11391	transcription start site region 11391	1716 bp downstream